Scaffold Ga0068500_1180791

Overview

Basic Information

• Taxon OID: 3300006332
• Scaffold ID: Ga0068500_1180791
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_1_0200m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2649
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008252	Metagenome	336	Y
F015219	Metagenome	256	Y
F020919	Metagenome	221	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068500_11807911	F015219	N/A	MKNLPFAQWTRIENRHGGGIPDLYGIYGGQAIWLELKCIKQNSIKLSPLQISWNYNNFRHGGKNYYIVQDTRSKVIKLYDGDKGREIKEKGYLYGGQSLILPPPTKWEDLQSFLFP*
Ga0068500_11807913	F020919	AGGAG	MPELRIQTAVDNGDLPKDHGRSFKALTLFDALKNTAVIKKYNEQFEKEFGRPSVFASPIKVPRS*
Ga0068500_11807914	F008252	AGGA	MVNNKYPNSSELWFFYDDEISIKWDCDKSFTVWQKNDIVNNFTVEESMTPKQAEQNADEWLADVLQEEKLRHADIN*