Scaffold Ga0068500_1155699

Overview

Basic Information

• Taxon OID: 3300006332
• Scaffold ID: Ga0068500_1155699
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_1_0200m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3807
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023709	Metagenome	209	Y
F028526	Metagenome / Metatranscriptome	191	Y
F073653	Metagenome	120	N
F083236	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068500_11556991	F023709	AGG	MKNSELKKFDAVLRMTRFSTKRKGCEKKRLSKRACRGKVIV*
Ga0068500_115569911	F028526	GAGG	MELFLGEIKTKPELFLKLTKRISRPDYTMHFMEDRNGRKAMFYNYKGPEFNEGDCVLLKATIAEHRKDKYSSEPLTYINRVTILENKGSVK*
Ga0068500_115569912	F073653	N/A	MAEQEINQTIIETLRGVAVEFGKMSSPTAGVDTKGKSKKGKSYEGFTFGISARMDGEVKVFGKNFILINWQAGRQWENKVCRSLNEAESWFRSKEWAGYNNEQEDK*
Ga0068500_11556999	F083236	N/A	MVIHIGDLVRLSGKTRHGKNRIREHGDLAEVAHIDGVLNALKKFCVIHKHGDSWRWIDLPEDEHMNWEMVEKNDKFHFDNFQ*