Scaffold Ga0068500_1151931

Overview

Basic Information

• Taxon OID: 3300006332
• Scaffold ID: Ga0068500_1151931
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_1_0200m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3695
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004849	Metagenome	421	Y
F008153	Metagenome	338	Y
F039173	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068500_11519312	F039173	GGAG	MDKDLIHVLEKIANGIEESNDILNRIANHYDGVVPVMTRNANRVEKAHMEVEEDNRSPLDKMYEGLFKPQEN*
Ga0068500_11519314	F008153	AGGAG	MAKDLITMNNVNIQPLMESLVELVKDKKATGELDDLINAKVPEKTSADWKLICGVLCNSVVEWVAINKDDDVQSTDLLKHLQSDVGYIMKRLGLS*
Ga0068500_11519315	F004849	GAGG	MTKSEFKRKVGMGFFSCEWVNNAGSISKIKRGILGGFAWRHTNNPVPTNVKEHNDYVLAYRVGNGLLPQHRRWANINPLTITKINGQEV*