Scaffold Ga0068500_1134580

Overview

Basic Information

• Taxon OID: 3300006332
• Scaffold ID: Ga0068500_1134580
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_1_0200m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5442
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (76.92%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018196	Metagenome / Metatranscriptome	236	N
F052643	Metagenome	142	N
F056050	Metagenome	138	Y
F058216	Metagenome	135	Y
F105930	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068500_113458010	F056050	AGGAGG	MKKKKEITIEDFDNWLSKCPVPYEQTCNGLHTTEYYSFNLIDCESEALENEIKKMEEDE*
Ga0068500_113458011	F105930	AGGAGG	MKRYKVTVPEQELIVEAEDEGDAESQALGLWDWGNVDMDVEEDE*
Ga0068500_113458012	F052643	AGGAG	MDDKRYNELKSKGVIDKNDMVLFKGEQVPYYYLNEDLSDFNKPRGNMPYQSDEWAFKFFKKHGLYDNLDVSSKSEVADEMFKLVETGKYKKRNLIKVLREKFPNVKAGVIHRLIKKNLSLRILEIDTTYKTKPYVIKGKYYIGG*
Ga0068500_113458020	F018196	GGAGG	MKADDITKAVEYKQGHFNMVQYLLKEKPNWSITVHDKETGETPVEYSKDYEQIRKAIKDYETEIVVYQEDKRQIGWAWFIPYNETDEDIVADYSNTLSMNKWAKQFEELHKQLEDR*
Ga0068500_11345808	F058216	GGGGG	MNKWEKSIAQLVKDKHWSVEGLAKAINITQEDIRRWEKLNKPYKKSKKKYMR*