Scaffold Ga0068500_1132394

Overview

Basic Information

• Taxon OID: 3300006332
• Scaffold ID: Ga0068500_1132394
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_1_0200m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10002
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015220	Metagenome	256	Y
F017655	Metagenome / Metatranscriptome	239	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068500_11323947	F017655	AGAAG	MTNGFQFSKSVSLGHIVATVGIIIAGFTFIYDLREAISILQFKGETVEQRLDRIVNRTDDQFDQIMDHLIRLEEKIDTLNGE*
Ga0068500_11323949	F015220	GGAG	MKIDAKFFGAILFLIAQTSGAIWWASSLSAEVERLAGIQAVAIPALEKEAKDCGIAIHNNEAAIQELQEHDKAISGLDVLGFRIDSLTEEISKLRDEDVAQRKVMNEIMSQHESIFDMMQGNSMTQQKGGYGGYSYD*