Scaffold Ga0068500_1101992

Overview

Basic Information

• Taxon OID: 3300006332
• Scaffold ID: Ga0068500_1101992
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_1_0200m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7139
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (95.24%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007343	Metagenome	353	Y
F053336	Metagenome	141	Y
F065849	Metagenome	127	Y
F078817	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068500_110199211	F078817	AGGAG	MNKPLTRKVKDHRGNEHEVYKWYWMKGWEFYQTEPSDEFGVTFGYMTNCPFPEWGSQHEAELNDISSVTAERFDLWELAPPQGWEWLEKEN*
Ga0068500_110199212	F053336	AGGAG	MQEYFEYLAELQASGTMNMMWAPTMLQADFDLDKKEAREIFSKWCESLKSG*
Ga0068500_110199221	F065849	AGGAG	MLKIDDKVKFHYLKQFKDELKSGQVLTDYATTSESYSGKVVDVRNIIDQPVSSETIRRDNIKGRRSEVLYTVELDGDEGVKAFYDGRMVGTEVLPKTKRGVWKLMASAFKRRKPQTA*
Ga0068500_11019925	F007343	GGAG	MRVSDLQPADYPQSPSVELPNSDAHRLFTNDFNKQSFIEAHGDVEIVWNERYSYWEVPAFAESRRIYGEAKQRACATWGCE*