Scaffold Ga0068488_1313186

Overview

Basic Information

• Taxon OID: 3300006331
• Scaffold ID: Ga0068488_1313186
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT233_1_1000m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1332
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000615	Metagenome / Metatranscriptome	984	Y
F001048	Metagenome / Metatranscriptome	793	Y
F042009	Metagenome / Metatranscriptome	159	Y
F059074	Metagenome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068488_13131861	F059074	GAG	MEIDLSLNRSLEELVSSYFEAYEAGMGCDSFLAVNVNSTAADVSDFYVLENYLSDYGAI*
Ga0068488_13131862	F000615	N/A	VSGLERPENIMCRIRSFYECSDGTMGFAEMVVSYDEDIAGLIRHWGTGGRMVITEHIDLV
Ga0068488_13131864	F042009	GGA	MICSNCGERISKGIDIGHQWNNPEGLAFACSEKCAEEAPKNWLSENPTTLSKNKFKKKD*
Ga0068488_13131865	F001048	N/A	KSMKIKSTKQFWWRLNHLKRNGGEITVTDRTPEMDVKDFNRIELLVNKRVRWEIGSEGMEVWNACGYKDIPTLAKAYGIK*