Scaffold Ga0068488_1141598

Overview

Basic Information

• Taxon OID: 3300006331
• Scaffold ID: Ga0068488_1141598
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT233_1_1000m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2916
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005400	Metagenome / Metatranscriptome	402	Y
F023718	Metagenome / Metatranscriptome	209	Y
F048371	Metagenome	148	Y
F059074	Metagenome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068488_114159813	F005400	N/A	MTPEKQKPTLGLGKNYKGFKDLTDTNMCYRCSYCDQGFNQIYSLNQLAIEYFICDRCVKYYKLTIKDLIELRYVRDRLEWQDADCWPGKG
Ga0068488_11415983	F059074	GAG	MEIDLSLNRSLEELISSYFEAYEAGMMCESFLDVNVDSTAADVSDYYVLENYLSDYGAI*
Ga0068488_11415984	F023718	GGA	MKEKIDLSLNRSLEELIASYWEAVNGEIDNTQWGSFYALESYLSDMGAV*
Ga0068488_11415986	F048371	N/A	MVMDLRKVTGVMFLTFILISYLSYRAEWNWFMYIHIIQFFKYIDLPLEYWVFLDRYVFNGAL*