Scaffold Ga0068488_1132872

Overview

Basic Information

• Taxon OID: 3300006331
• Scaffold ID: Ga0068488_1132872
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT233_1_1000m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2278
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003091	Metagenome / Metatranscriptome	508	Y
F040145	Metagenome	162	Y
F053334	Metagenome	141	Y
F055198	Metagenome / Metatranscriptome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068488_11328722	F040145	AGGA	MTKKKWLREKVFVDMYGRPYNMSDVPMTYMLRSEAFAKRKLSKKEINYLYNKDQTTIIIDGC*
Ga0068488_11328723	F053334	N/A	MAKKKKEKIPFHIANDYKEYSYEDGGLTITFWAKDDSDAELYRKKVEGK*
Ga0068488_11328725	F003091	AGGAG	MTMLPRKPITKPGEGKQRQKHLSHERYLEEEYQISLALKGPKRLEDEEFEDYKLRMKAENGLLKEYLRGVWMKDGISRMDNKEKK*
Ga0068488_11328728	F055198	AGG	MTKFEEVSCKVLGVILFLILCLLVLQLNGCTCSIPEAPLEHEYIDEVKMENFA*