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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300006331 Open in IMG/M |
| Scaffold ID | Ga0068488_1130265 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT233_1_1000m |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Hawaii |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6922 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (20.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 22.75 | Long. (o) | -158.0 | Alt. (m) | Depth (m) | 1000 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001930 | Metagenome | 615 | Y |
| F005610 | Metagenome / Metatranscriptome | 395 | Y |
| F012510 | Metagenome | 280 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0068488_11302651 | F012510 | AGG | MKSFKSHINELKMKIPNSKGWVLGTKDEPKKLKDKDIVWRSKVHHWDSDVRSDDTRLIIVKNKGKFDMWAKSDKSGKIVFHFGTKPTLDAAKEFASIRKWQEKK* |
| Ga0068488_11302652 | F001930 | N/A | MKRFKQYLKEGVAWELSASKMIFDFGQMSNMKIPFTSKTMEWIFKVQLPRATVFHVTSGIGLEKLKKLQNKKKSISAFFNMSADYIDSGIKTEGGVVVEMDANIIVSSKSDIMSQPDKTGRRWVALYSIDPKYKLEKEMTQMLMDLAIKHDPKNKEYLKTSPEIGIGVWWKLQTDLLTNFAKDKAGKKMSLIIADYIDGVNAILKKHKKEIQGAVHGYYVRRGTIAVKHPSGRMVGGDSEISEWNAWDEQVVDKIKIEKVHTFNTARREADWVKTDIIPILGKIPHKHWKSAAELSTYISQVADAEVRTFGGWARKK* |
| Ga0068488_11302653 | F005610 | N/A | VRSFKEYLTEADSEEVRDAKKVFTALQGMYPKIPKFPLVFKNLQTSKNLDKRGGGYLQTSKLKGGKFIFVDRMVIDDSGLGSFEPDYAVVHEFAHAILAFTKRDLGHNKRHADLTYKLAQKFGLA* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |