Scaffold Ga0068483_1154435

Overview

Basic Information

• Taxon OID: 3300006330
• Scaffold ID: Ga0068483_1154435
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_1_1000m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2023
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000659	Metagenome / Metatranscriptome	952	Y
F005610	Metagenome / Metatranscriptome	395	Y
F061278	Metagenome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068483_11544352	F000659	GGA	VRSFKEYLKEVNSKYIVAKNPSDKKWYAMGHVGSNKWMPVSSGFKNKAQAQKWAKSQDKVDIAARGEISGA*
Ga0068483_11544353	F005610	N/A	MKTFKQYLTEADSEEVRDAKKVFTALQGMYPKIPKFPLVFKNLQTSKNLDKRGGGYLQTSKLKGGKVIFVDKMVIDDSGLGSFEPDYAVVHEFAHAILAVTKGDLGHNKKHADLTYKLAQKFGLA*
Ga0068483_11544354	F061278	N/A	MKTFKGYLKEEVAWQQSASTKIFDFSQIQYMQIPLTSKTMEWIFKVQLPRATVFHVTSVDGFKILKGLQNKRKSISAF