Scaffold Ga0068486_1054283

Overview

Basic Information

• Taxon OID: 3300006329
• Scaffold ID: Ga0068486_1054283
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT233_1_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1286
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023367	Metagenome / Metatranscriptome	210	N
F029129	Metagenome / Metatranscriptome	189	Y
F029472	Metagenome / Metatranscriptome	188	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068486_10542831	F029129	N/A	KVNKDGDKLHRLIDDLGWEYQRMGLAGRETYDEICHLLNMIPEDEVYMEI*
Ga0068486_10542833	F023367	AGGAGG	MEESKDTKMKKFIFEEKFISYADVEIYAENEEDARRQFQNGNYQYYDVSDFTDGHELINVREETD*
Ga0068486_10542835	F029472	N/A	VEIVIINYNHSDQMLSRKTIENLTDKLMVEVANYVTEDPRFTELLNELVPEAIDLELGQVDDYSVVQIITSIQQHLRCSPNHSQIHYPRCPIT*