Scaffold Ga0068486_1037439

Overview

Basic Information

• Taxon OID: 3300006329
• Scaffold ID: Ga0068486_1037439
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT233_1_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3014
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006662	Metagenome / Metatranscriptome	367	Y
F036739	Metagenome	169	Y
F072437	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068486_103743910	F072437	N/A	MAIDTFTIKFNEYELETILAAMDDYRHYDDEGMDPEDLIGRTPVLARVNAIEEKISDAFANQ*
Ga0068486_10374395	F006662	AGGAGG	MRTLTTKEYELISQIYNSTDENEANLSFEFGLMNDTYYQLFHSYTEGKK*
Ga0068486_10374397	F036739	GAG	MITPLSPLVVNKNRRGSFPQKVTQIAVNLWKKYIKTLINVFLNITKRFISFLKSLINREFN*