Scaffold Ga0068486_1018120

Overview

Basic Information

• Taxon OID: 3300006329
• Scaffold ID: Ga0068486_1018120
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT233_1_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6223
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (59.09%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001479	Metagenome / Metatranscriptome	687	Y
F005533	Metagenome / Metatranscriptome	397	Y
F012353	Metagenome / Metatranscriptome	281	N
F021120	Metagenome / Metatranscriptome	220	N
F034958	Metagenome / Metatranscriptome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068486_101812013	F012353	N/A	MTLYTSGDWKVDPNKDITFPLVDWIVKLFPVIKDKEIEINQVDLDGEFAMGFCQDNDGEFLIHVHNGLDIREYVKTLIHEFTHVRQTVDGITDANAREDEAYYLEEQLSKAFWDSNISGTQDVDL*
Ga0068486_101812014	F034958	AGGA	MKKSKVDKMIDNLEFCIEPQGLNDNQIGDVLAATNELGVNVEYFCNEFMETSSIKVHDDDYLNIAMFNATFWEF*
Ga0068486_101812015	F001479	GGAG	MSKEMLFLCDVLTDWCKKNKLPHRCASDLLYCDDTKGRLTGNQVYWLENFISTWDIINQTT*
Ga0068486_101812017	F021120	AGGAG	MKVFTIQFTEDELTELENVLDQHVYAEAIENKGSEGTIGTIHNRILDVHYQNSDGVVPVQEVAHKHFRKDLDLL*
Ga0068486_101812020	F005533	AGG	MEYTHNELQLLTLISNINNQFYYIGQEDDKVAPIDVKKFTEYCVAFIDSLEIETND*