Scaffold Ga0068499_1048072

Overview

Basic Information

• Taxon OID: 3300006327
• Scaffold ID: Ga0068499_1048072
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_1_0125m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6024
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 125

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001235	Metagenome / Metatranscriptome	741	Y
F001625	Metagenome / Metatranscriptome	661	Y
F101840	Metagenome / Metatranscriptome	102	Y
F101853	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068499_10480721	F101840	N/A	MATTYCTVEDVSDFLRIPITPTTTPNKAQVEKIIKRKEDEIDR
Ga0068499_104807211	F001235	N/A	MPTELPVDTGGTDYGKKLWEKHQSNEYTRVNEYKEAVCLNCLKTDATSATIADICSECAGKRGREPLLATVSQKMYGLCFFCGYFKFNIEQINGRFCRTCHRRIANVTKEYNKKGGMFKADPFWIKMRKKLGKDWRQLMSDGSQNKR*
Ga0068499_10480723	F001625	N/A	MAVTISTSDWTNANVRKTLSWQAALTSKLRVYKVKVTAGGSDAYATNGVAADLKEQRISTLVAVIPEFTDSTYKVEYDKTNEKIKLYTVGGSAGAVFAELANSTSIANKIFEFLVIGY*
Ga0068499_10480727	F101853	GAG	MDITIKKGIAKVTGNFGVSFFSPLVGGNVAESIYDVGLTFEMSIMIAAISACFVTGLSISREVAEWGKQNGKTRKN*