Scaffold Ga0068499_1042550

Overview

Basic Information

• Taxon OID: 3300006327
• Scaffold ID: Ga0068499_1042550
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_1_0125m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5382
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 125

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039681	Metagenome	163	Y
F096026	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068499_10425505	F039681	N/A	MSLPNPTRLRIKPVYDVGYFGHDVHLPLTIAQTSNVTTLTPSTASFHQTLHDSAMPIDSTMQFIADSDKAELLHAGNDTNIDMSWLIVPDMTFWSYKIALTLGIGLKVSAHSSGNININNVHLTLTEVGDGAGDTVIADLTIPCGSANLTGTGEQITLFHADIMNKIQFKNGKPIKMRIQTEASKSGTATFQVGMLPIYPTLAPAIPKVWLLSQVEIHAHGSLDHAFPIWRSENNQELMDYSGCGQDGCA*
Ga0068499_10425509	F096026	GGA	MAVIPTALLAKQGAKQASKISAQYLGFDFIPLITSLLIFYSIAFVFAKYMEGVQFATGGIRAIAGVLGYNMPSTEELPNTWTQLFSETGVKGFKFWDIINIVAILIIIATAFNFQKTTEATGNKVQPITWAIFTMLVSFIVITGVSKLVMKLQQRNFQSEFK*