Scaffold Ga0068477_1256963

Overview

Basic Information

• Taxon OID: 3300006326
• Scaffold ID: Ga0068477_1256963
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_1_0770m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1683
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 770

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000245	Metagenome / Metatranscriptome	1468	Y
F000659	Metagenome / Metatranscriptome	952	Y
F005610	Metagenome / Metatranscriptome	395	Y
F005685	Metagenome / Metatranscriptome	393	Y
F061278	Metagenome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068477_12569632	F000245	AGAAGG	MKTFAEAKKGWEKLRNKRDAKYDKYVSDEIKKRKLAKHPVNATDDIKMRMKPNKPAFKFPSPTGSMMIHVYLRKMAPSKGQPKGMMAYNYQLEDK*
Ga0068477_12569633	F005685	GAGG	MKKFNEYSSFEDKILGTLKRGPCDLMTLSHKLKEDIMPVSSMLEHLKVYDKVEMYKEKWQI*
Ga0068477_12569635	F000659	AGGA	MLRFKEYLKEVNSKYIVAKNPSDKKWYAMGHVGSNKWMPVSSGFKNKAQAQKWIKSQDKVDIAARGEIGDV*
Ga0068477_12569636	F005610	GGAG	MYKMKTFKEYLTEVDSDEVRDAKKVFTALQGMYPKIPKFPLVFKNLKGRGSGYLETSKLKGGKVIFVDKMVIDDSGMSSFEPDYAVVHEFAHAILAVT*
Ga0068477_12569637	F061278	N/A	MKTFKGYLKEREVAWRQSASQMIFDFSQIQFMQIPLSSKTMEWIFKVQLPRATVFHSTTVDGFK