Scaffold Ga0068477_1251467

Overview

Basic Information

• Taxon OID: 3300006326
• Scaffold ID: Ga0068477_1251467
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_1_0770m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2408
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 770

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000245	Metagenome / Metatranscriptome	1468	Y
F001930	Metagenome	615	Y
F005685	Metagenome / Metatranscriptome	393	Y
F090861	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068477_12514671	F090861	AGG	MKTFKELKDKNEGYQEDQNLADLVGGEASDMIKALKKGDVRKAKTSYKAIGRLLK*
Ga0068477_12514672	F001930	N/A	MKRFKTYLKEGVAWELSASKMIFDFQNVPDMKIPFTSKTMEWIFKVQLPRATVFHVTSGIGLEKLKKLQNKKKSISAFFNMTADYIDSGIKTEGGVVAELDANIIVSSKSDIMSQPDKTGRRWVELYNIDPKEKMHKEFEKMVIDLAVKHDPRNKEYLKTSPEIGLGVWWKLQSDLKTNFAKDKAGKKLSLIIADYIDGVNAILKKHKKEIQGAVHGYYVRRGTIAVKHPSGRMVGGDSELSEWNAWDEQVVDKIKIEKVHTYNTARREGDWVKTDIIPELGKIPHKHWKSAAELSTYITQVADAEVRTFGGWARKK*
Ga0068477_12514674	F005685	GAGG	MKKFNEYTSFEDKILGTLKRGPCDLMTLSHKLKEDIMPVSSMLEHLKVYDKVEMYKEKWQIKRTKK*
Ga0068477_12514675	F000245	N/A	MKTFKEYSLDKKLDKYVSDEIKKRKLAKFPVNATDDIKMRMKPNKPAFKFPSPTGSMMIHVYLRKMAPPASKDTMAFNYQLEDK*