Scaffold Ga0068477_1162583

Overview

Basic Information

• Taxon OID: 3300006326
• Scaffold ID: Ga0068477_1162583
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_1_0770m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2969
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 770

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002348	Metagenome / Metatranscriptome	568	Y
F008341	Metagenome / Metatranscriptome	335	Y
F008692	Metagenome / Metatranscriptome	329	Y
F015662	Metagenome / Metatranscriptome	253	Y
F105490	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068477_11625832	F008692	N/A	MENKQTKEEECMPTSEEEFQADLDAQDMRYLHYCREQEEMYNDPVMNWSGLR*
Ga0068477_11625833	F002348	GGA	MKPNEKWVKYGGWLLSLLSILIGASFLWPHINVALLGIALIYLGVRIFNFSTFEEYREKRIKLLHKLMD*
Ga0068477_11625835	F015662	N/A	VKRVLRGAQVIKIGKNKGIMGIMKKQLIEKLIEDENPQIGFVEISSEESARVEIEVDLARERARERIQMEMYDDPYLNWSGHR*
Ga0068477_11625836	F008341	AGG	MTETLRKIVVETMIPANFNFMARDLDGSVHVFENEPNLDYGTNKNPLPCDMWDDPSGGNTMPVSFKTSIHAGNLTEELGDWRDSCIEITEYTTEDN*
Ga0068477_11625837	F105490	GAGG	MKGRTGKRLRQEGAINRVELTIEKYEKILPAEKELLKVGRKEKDLPPNVIPMLEKKIKHFEEKLERAKTTLENTKKNRGS*