Scaffold Ga0068501_1122145

Overview

Basic Information

• Taxon OID: 3300006325
• Scaffold ID: Ga0068501_1122145
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_1_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1454
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018449	Metagenome / Metatranscriptome	235	N
F051463	Metagenome / Metatranscriptome	144	N
F103418	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068501_11221452	F103418	GGAGG	MAFNKDDVIASAKKYGPKQKGKVSIFISQNRTSVDATGKEVIDTRKPSLFGYMTDNDMNMFSISLWKNKDAKKDRDGNTMKDKDGNTVYKITFKGNAESLGIKQNVVEIKPSGQEKDSLDDIFS*
Ga0068501_11221453	F051463	AGG	MDIVSAEEKLRDGLLQEQISQGRIELIRLLQNDKESGKSWVAIPKGSNNRYLKVATLMRGLRDKFNHTLILESKIKHDCEHRVIIEATLSHKNGGFLSSGLAERYKDSKSSNVQKQRAIECCQTAAWGRCIKSLLAVGYDISTADEIDRSIVSDSNQSDIDSEVK*
Ga0068501_11221454	F018449	N/A	VLEYTLDLSPNALAPGKESKMNKLLIILLSFLLVGCAAYQPIADLKASKNANYFQEDRQHCRLLIKEEFNAFYAAWYDRELLSRCLNGRGHNVLNTYTIGN*