Scaffold Ga0068476_1119455

Overview

Basic Information

• Taxon OID: 3300006324
• Scaffold ID: Ga0068476_1119455
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_1_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1622
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean: North Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001048	Metagenome / Metatranscriptome	793	Y
F007052	Metagenome / Metatranscriptome	359	Y
F018265	Metagenome / Metatranscriptome	236	Y
F030785	Metagenome / Metatranscriptome	184	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068476_11194552	F018265	GAG	MSMERHTLRAVKLTQNIFELNRVNKELVVVRKIVEDLEQRKMELMSS*
Ga0068476_11194553	F030785	AGGA	MKTATVEILEKDEKIFGSRTNGEYMVRRFEDGIEMGGEFHYTLTEAGAAVRKWENQTEK*
Ga0068476_11194554	F001048	GAGG	LKIVSTKQFWWRFNHLKRNGGEITVTDRTCPFDLKEWNRIESLVNKRVRWELGSEGYSNWSECGYKDIPTLAKAYRIL*
Ga0068476_11194555	F007052	AGGAG	MERNETYFVARLMKKGEFLSSEIFESLEEARLWAMKEAKLLISDLEMLRMTNVGDICVEIDKHFFGYEISSEELLKNSVRVS*