Scaffold Ga0068476_1108932

Overview

Basic Information

• Taxon OID: 3300006324
• Scaffold ID: Ga0068476_1108932
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_1_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1496
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean: North Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000245	Metagenome / Metatranscriptome	1468	Y
F002715	Metagenome / Metatranscriptome	535	Y
F005685	Metagenome / Metatranscriptome	393	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068476_11089322	F005685	GAGG	MKKFNEYSSFEDKILGTLKRGPCDLMTLSHKLKEDIMPVSSMLEHLKVYDKVEMFKEKRQIKRTKKN*
Ga0068476_11089323	F000245	AGGAG	MKTFSRFKESRLDDKLDKLVSNEIKKRKLAKHPVNATDDIKMRMKPNKPAFKFPSPTGSMMIHVYLRKMAPPASKDTMAFNYQLEDK*
Ga0068476_11089324	F002715	AGGA	MAAEELQSVKLEVGLLKNEVEVRGRQIETLLQKLDLTTDKLQQLTVQIIKLNTRQEDYLRHSSNMNDEFKLLHTRIGDLHDKQLAANKEIEERLDRLDQYKSKLMGMIIVVGCVVGTIVATAISIFLKE*