Scaffold Ga0099624_100005

Overview

Basic Information

• Taxon OID: 3300006321
• Scaffold ID: Ga0099624_100005
• Source Dataset Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 160380657
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 237594
• Total Scaffold Genes: 225
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 216 (96.00%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F080166	Metagenome	115	N
F089057	Metagenome	109	N
F092229	Metagenome	107	N
F092232	Metagenome	107	N
F095629	Metagenome	105	N
F095631	Metagenome	105	N
F099452	Metagenome	103	N
F099453	Metagenome	103	N
F103435	Metagenome	101	N
F105379	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099624_100005132	F089057	GGAGG	MTNIIPLIAKKYNRKGDTSGTLKSLVDDLVFIEDVDDSLLFITNIPRETKYSIEEVFNIITSNDKYSEVLSNVLSSLNIDLDYHKLLLNAIDSESYKIISLISDNIPTPDLFLAKNNYGCLTTALGKSYTIFDKVLGMVISQLLHTSSKEDKILSLFMTICIINKDIDKLASLCTGYLAITKDEVLVKKLMNESAMTAFKYMSDEDIHTVVDDINSRSVLARYLSRM*
Ga0099624_100005140	F103435	N/A	MKFVFCTEPIYQYYRSYLYADDKDKLDKQLMIEYGDYKDIWDLKQQQDALPENIFVAELTARDYPRNPWNYVSQLISKLTYQYLIDSPDFETIFSEVLFNQSEVEFYEFYKAIFRFYNGSEVFIIVSNDEYSDMVTQMMCNVIRRTYGIHPQIIYDMDDVYSIRDDIDFSPQGAQLAYLQRAAYYKLEAKKNFEPLQIWYPFDMNTYTNALE*
Ga0099624_100005170	F095631	GGAGG	MASDAVSVNKTLRSYQETVLNTVQNDTLLNANIYDIHQYIENIKKRYVDEDEITLSMGIFGYLGDVNSNALQNAVTMAAEYSNEAIPIKAKFEKNVISHALMLGINKIFAEPATMQAMFVFYEDELVLNTISDTFRFDRDIKIMVGDYEFHLPYDLIIKRIELPTGEYIYTGMYDTTQSNPIITRNSNDVDPYLKPTVRSKIDGRNVVMLLVDLRQYEYMTYHKTIITNNPLESKMLQFEFDNQLAGFDVDVKEYDQPTRKLKPVYNGLNTDGVSNFCNYTYIDSSTIRVMFDNTSYLPTANTEVTVNLYTSQGANGNISYKDSIYFRVKSDKMNYDRLNLLVIPTSDSQYGIDKKSIADLKRLIPKEALARGSVTNSTDINNYFNTIDDDDNKLFFFKKMDNPLARLYYAFVLMDSPTNIIPTNTIPIEAIRRDFDNISDSNYILTAGNIIKYDGTTNASIAYQASEDELNAARKNEFLYMNPFMCIVNKKPLYVSYYMNIMDVNKLLEFTYVNQDSKVQFIATKMNWYRHYLSDRDTYFGDISIMQNIQSDIGLVHKDDPHDPEKITGVDIKVLAVFYSDDKYQVPYRWAEAEFVNYDQGTYVMDYKFKLNTDNKIDKNIKLKINNVYEVGNATRLSPGYMANNMHMKIFVFAKDVFGYNAGLHKSDQIFTADFLEGYSLTNEYTVKYGIDFLYNYSDLIESHIKVKKQDNGQISYIVDRVPVISYDYVNTEERIQDFINNLEKKRIHILDCLDVLEDSFGIDIKFFNTYGPSKLFYVNDGVPLNRVNLSMTFKVKFLTTTDKYLSEYIKNDIRKYIEDKSRISDIHIPNIVTYITQKYAENVTYFEFLDFNGYGPGYQHIYRKDESIVGRIPEFLNINTIGTENNALDINIIIA*
Ga0099624_10000519	F105379	AGGAGG	MVIHFPLSQSDIESLLSISKLLKCDKILYDRNYVNPIIGVGPEKSYFQTTSFMVDLSPHINNLLVNISDLKNLGKITQLEPSKDNPEIAIHKPVVSVFNWDAEYVKACMNSLREYQIDDNIIARTDEFHNTDDYNELMAGSASTGASRISVGGYMIDIPKSAMPTLKSDHVVATVYKAPNKDFNVLRFKITKRNGIIVNQSMLFLPY*
Ga0099624_100005196	F080166	N/A	MEVTFNNIIKRINTEIKENFHTEYVVGANKLTTNLRYRYRMRLSPRGETVGVIIDWDNYDDLCTIIDEAIDICDPNNKTSPFKRMYSTAGDLLDIKCDSLKVRYLHLEDRFGNRLDLMPFVLIDDHNGTLIEAMKFRFNNDLIFDVPVSRLKGFRRFLMTYNPLLHAGSMARYMAITPLLGNNRQNMMK*
Ga0099624_100005198	F099453	AGGAGG	MNRFDIIELAQETLIFVYNTFNGKVNTLDPYTRLNFVAGYLDTKTNIARTTPYGCIYISLEAFADTVEAHKFIDTDQIRNLALEIIIHELTHVDQLIDYKYIKFNNGYRDEIELQCVKQSCQWILDNIQYIRSFGLVVIPEVYQARLANLTNVIYTPKYPMAIAMGKLEYMLGRKFREFSNNNIEIEYVDRLKTHYTFMVCENRVYINSANLNDLGERLLNDKQYTVEYLEYGDSKLVIKITQGA*
Ga0099624_100005217	F092229	AGGAG	MNKEYRFDHIPEVVLRNVKFIRENNIDIGTGDDVLECMMDINPVLRQRIYDDYDLAKDVAERRFNSTIEDLDLTTILQKCTTRPYIAILNNIYFRYFNSKLIEDMFKLGESIKVLDLAIEYECEYYTVNSAKTNIRRYMQQAYFDKYAADADIISSHRVLTDPQVNAVKSAEFTYDLLMAARSENFNPEMVRDIFLKYGLKTNSSRNLYTRMDNNLSLFYYLEDYLEEYVNTGKFTYGSQEYHTIKEFKYLPLMNVLTQLTRSNPSGYVLNHKLELVKG*
Ga0099624_10000525	F095629	GGAGG	MRELIICACLFGCFGVAHAAAPVEQPKEVKVVHNDDSVALHKKIYKLEQRIERLEKLLVKKEGK*
Ga0099624_10000545	F092232	GGAGG	MNTQAKFIADYNDKNRPKFNDKFFTKSDDDIIEDLKDVILSCERNKFYTIKVLGFEVIDDYTEVQKLLIGDETPSISIKDSDLKILKVTYHVACTKDEDTFDVLIAIPRVIDGAYIHLNGNDYFPLFQLVDGSTYNNTTAAAAKTQSITLKTNSNAVKMLRNFVDLNTTKEKTLRMAMFSVYLFDHKVTLFEYYLARFGWYETLSKFNFEDIIKISDHDIDDPEYYTFAIANSHMKSPFYISAVKSFVDNDRILQSFIASFAKAISLYATKKTTLDQIYTTEFWVCKLGYNFVSSETSVFTKGNAIIESLENSYDIPTKKRLRLPDHIKEDIYSVLKWMACEFSSIRLKNNLDASSKRIRWSEYIAAMYIMLINVKLRRLPEKHDPNMEAYRIKQQLNTPPMALIAELQKSNLKGFRNMVNDRDSFLQLKYTIKGPSGPGESNSKNVARNVRAIDPSHLGIIDLNTSSASDPGVGGMLCPLNYGVYEWNSFTNEEEPNVWDDNFSKMLNIYREEKGYTSAIMLADDAGLELTDTRDPEAVAFDAHLLGQTIAKVARTRAFEKQLRPALINMEDSCSIYFEEV*
Ga0099624_10000591	F099452	AGAAGG	MDKTYTELLQETLSKIYELKDLNNRDRGKALTIFIGERLNRELLLSSRNVFTLYKDIINLDDVSLLAELRHIEWYKDWFTSDKRNSDLIDLSKFNFRVLERFEKEEYLRDAEHYDFEGVSEVDSYDLFDTLREDKDIELFKLAAENILINHGFFNNTDYNLYEIPDEYMSNQEVCLYMCLLNTDNLDFMDKKTFDSTLLYNIVKDRICGSVYFTIFDSLNEDTRTRAR*