Scaffold Ga0099581_100100

Overview

Basic Information

• Taxon OID: 3300006319
• Scaffold ID: Ga0099581_100100
• Source Dataset Name: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 764062976
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 72426
• Total Scaffold Genes: 65
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 58 (89.23%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F080166	Metagenome	115	N
F081455	Metagenome	114	N
F095631	Metagenome	105	N
F099453	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099581_10010028	F095631	GGAGG	MASDAVSVNKTLRSYQETVLNTVQNDTLLNANIYDIHQYIENIKKRYVDEDEITLSMGIFGYMGDVNSNVLQNAVTMAAEYSNEAIPIKAKFEKNVISHALMLGINKIFAEPATMQAMFVFYEDELILNTVSDTFKFDRNIKIMVGDYEFHLPYDLIIKRIELPTGEYIYTGMYDTTQSNPIITRNSNDVDPYLKPTVRSKIDGRNVVMLLVDLRQYEYTTYHKTIITTNPLESKMLQFEFDNQLAGFDVDVKEYDQPTRKLKPVYNGLNTDGINNFCNYTYIDSSTIRVMFDNSSYLPTANTEVTVNLYTCQGANGNISYKDSIYFRVKSEKINYDRLNLLVIPTSDAQYGIDKRSIADLKKLIPKEALSRGSVTNSTDINNYFNTIDDDDNKLFFFKKMDNPLARLYYAFVLMDSPTNIIPTNTIPIEAIRRDFDNISDSNYILTAGNIIKYDGTANASVAYQSSEEELNNARRNQFLYMNPFMCIVNKKPLYVSYYMNIMDVNKLLEFTYVNQDSKVQFVANKMNWYRHYLSERDTYVGDISIMQNIQSDIGLVHRDDPYDPEKITGVDVKVLAVFYTDEKYQVPYRWAEAEFVNYDQNTFIMDYKFKLNTDNKIDKNIKLKINNVYEVGNATRLSPGYMANNMNMKIFVFAKDVFGYNAGLHKTDQMFTADFLEGYSLTNEYTVKYGIDFLYNYSDLIESHIKIRKQDNGQISYIIDRVPVISYDYVNTEERIQDFINNLEKKRIHILECLDVLEDSFGIDIKFFNTYGPSKLFYVNDGVPLNRVNLSMTFKVKFLTTTDKYLTEYIKNDIRKYIEDKSRISDIHIPNIITFITQKYAENVTYFEFLDFNGYGPGYQHIYRKDESIVGRIPEFLNINTIGTENNALDINIIIA*
Ga0099581_10010058	F081455	AGGAG	METTIKKVEYGQIISNIVKSLNNVSDLVCSKKPNTEEKDIPPVEEIGAETVDIIDTAEEAIQQPLQNTDSSIAVNFSQMVNKPKEEVKTEVNSVPPEGETKLNVVFPKTEHILGNYVDYDSFVKIKESNTDKVVRAVRLLNYKMSDQNAAAAFAQFVSEFNPECDPNKRLRYELIRHQGREKDLVIRLSTVINGKTKYYADIYPDLNKIDLDHHLISSAKK*
Ga0099581_10010059	F080166	N/A	VNILANFENYNKVVEQIFELNYYLTFKLEVTFNTTHKKINTEIKENFHSEYVVGANKLTTNLRYKYQMRLSPRGEKIGIVIDWDNYDDLCTVVEEAINICDPENKMSPFKRLYSTTGDLLDIKCDSLKVRYLHLEDRWNNKVDLIPFVLVDDNRGTLTEAMRFRFNNDLTFDVPVSRLKGFRRFLMTYNPVLHAGAMARYMAITPLLGSNRQNMLK*
Ga0099581_10010061	F099453	AGGAGG	MNRFDVIELAQQTLTFVYDTFNGKVNTLDPYTRLNFVSGYLDTKTNIARTTPYGCIYVSLEAFADTVERQGFIDTDQIRNLALEIIIHELTHVDQLIDYKYIKFNNGYREEVELKCVKQSCQWILDNIQYIRSLGLVVIPEVYQARLTNLTNVIYTPKYPIAIAMAKLEYMLGKKFREFSNNNIEIQYIDRLKTHYSFMVCENRSYINSRNLNDLGERLLNDKQYTVEYLEYGNSKLVIKITQGA*