Scaffold Ga0068475_1047571

Overview

Basic Information

• Taxon OID: 3300006318
• Scaffold ID: Ga0068475_1047571
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_1_0200m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2771
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049037	Metagenome / Metatranscriptome	147	N
F049924	Metagenome / Metatranscriptome	146	N
F060975	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068475_10475713	F060975	AGGAG	MGKTIRRNPVARNSEKFNKPKTIRDRKKDFYRPDSKREFEEAIEDMGFDEHNRKDAIINQYQDELARSQEDGWPYED*
Ga0068475_10475714	F049037	N/A	MEGSRACNDFKLFYDTGKITHHDRSPNWYIDMPPQTITVRELSERCGFGKETNKLKHWLGLKTYPLIEDPLGFYFLRHIDGTIENTYTGKSSKRLRNAQAACREVVLEAKVRVGTTRQQDHVGRVVQREMGRNLAGVRQQEDPGES*
Ga0068475_10475715	F049924	GAG	MNQVGGSTKNLFVMRTVQRDHERYAVTLIVCKHKDGEQDKMRKYATQRLIAKDVPVHLKGLFEGQNLRFRGRGSRKRAVDIVMNSKKLRDKYGTNGLLARFNQDLPLEFADRMSVYCR*