Scaffold Ga0068475_1041213

Overview

Basic Information

• Taxon OID: 3300006318
• Scaffold ID: Ga0068475_1041213
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_1_0200m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7962
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (75.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F058539	Metagenome	135	N
F070688	Metagenome	123	N
F095607	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068475_104121315	F070688	GAGG	LPSVSVGTTPKKIVNANRNRTGLSINNIDGNSAIFLLDNITESTATGAIQLTGGQTRNYNITSAVVGTNQDGTPRFSGQRKVAGAHYAVASSGTQTVHYEEEWGGSQ*
Ga0068475_104121316	F095607	GGTGG	MPFSIVGFGESEDRSGVPTAITPFGNDQISDVSGDELRISSIPNPAIAYIYTKSSAAGYPVNDWKLSAPEIAAVPLTGTGGDSVGSDTYFGTQINPVQVDTRAFPSGYGMTNSSPLTATMEEDDEAGVAHTCSMVLGVVNQGEEIAYNDGYARVDYYNRITGFSGNVTVNTFKSYSCTDSSLTFNSLPDELVRIVGARVEMPNGTCFRWIFPTGSSSRPGGLISNSNLSKTPVVNNFPTRPFRAITEHPLIEVVSSTAETITSVEIAYQRV*
Ga0068475_104121318	F058539	N/A	MGLLDRLMGNKKSRKRTYKEIRYDKILSKQQNMILESSLAANEALKMEVKSLRQVIFDQDDLQRDLGISPIEVNAQTQNNVLASDGEFNAADLIASVAKGLKPDSIPGGRVALDAFQSFILSNKNEVNALGSHYISQAMPKKEVIKDQVINQ*
Ga0068475_10412134	F070688	GAGG	LPSVSVGTTPKKIVNANRNRTGLSINNIDGNTAIFLLDNITESTATGAIQLTGGQTRNYNITSAVVGTNQDGTPRFSGQRKVTGAHYAVSSSGTQTVHYEEEWGGSQ*
Ga0068475_10412137	F058539	N/A	MSILDRFTGTKRRNKRTFREIKYDKILSKQQNMILESALAANEALKMEVKSLRQVLFDQDDLYRELGVAPIEVNQGSPSPLSTPTGEFNTADLIANIAKGIDASKVPGGKIALQAFSEFIVSNSQEVNALGSHYMQQAMPKKEVIKDQVINQ*