Scaffold Ga0068473_1397985

Overview

Basic Information

• Taxon OID: 3300006316
• Scaffold ID: Ga0068473_1397985
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_1000m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1516
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001930	Metagenome	615	Y
F039345	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068473_13979852	F039345	GAG	MKKIWNRFTAWLSGWPESKSRKSEREQIYLFEEEEQMIRKNNKNIGKKLKKKTEIMN*
Ga0068473_13979853	F001930	GGAG	MKSFKGYITEEVAWLQSTSKMVFDFGQISSMKIPLTSKTMTWIFNVQLPRVTVFHVTSGIGLKNLKRMQNKKKSISAFFNMNADYIDSGIKTEGGVVVELDANIIMSSKSDIMSQPDKTGRRWVELYNIDPKEKMHKELETMMMDLAVKHDPRNKEYLKTSPEIGIGVWYKLQTDLLTNFAKDKRGKKMSLIIADYMDGVNTILKKHKNDIQGAVHGYIVRRGTVAVKHPSGRMVGGDSEISEWNAWDEQVVDKIKIEKVHTYNTARREAD*