Scaffold Ga0068473_1326862

Overview

Basic Information

• Taxon OID: 3300006316
• Scaffold ID: Ga0068473_1326862
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_1000m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1285
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004843	Metagenome	421	Y
F005464	Metagenome / Metatranscriptome	400	Y
F033079	Metagenome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068473_13268622	F005464	AGGA	MNFRDKDNALRMAGWTLSLLCMIIGSYFVWPHIHVALLGIVFFYLGVRIFNFATFKEYKEQRVKLLLKLSEW*
Ga0068473_13268623	F004843	AGAAG	MKWMFIIVIAVALSLNGCADTADAEDSAATTPAETQNEARTNLASDDTTWIAIVMTWRPVIYTIDKEFASEINCWNYYDNGAGESKMLNNYGTQILDHQGNKPDAEYMKKHRPQHRVYPTRMYKNFGGWMMWLTCDIKGKNEGL*
Ga0068473_13268624	F033079	N/A	MADEIAGNRLVWRHIQRENQRMILDPLGYDAIKDIDEIHSRHRRKTDDPYIKATSEKITHRFPKIDDAERR*