Scaffold Ga0068473_1186516

Overview

Basic Information

• Taxon OID: 3300006316
• Scaffold ID: Ga0068473_1186516
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_1000m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3975
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006364	Metagenome / Metatranscriptome	375	Y
F007608	Metagenome / Metatranscriptome	348	Y
F012070	Metagenome	284	Y
F017906	Metagenome	238	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068473_11865162	F012070	GGA	MPIKIKINEEANESYEDYILYEILCDYCDEEYTIKYMMNNRPKQSIECCPFCSSLIEEPVESIDEEETGWD*
Ga0068473_11865165	F006364	AGGAG	MELDNDTRKMRILNYLDYMDDKSLQEISVALYNLSIRRREVKKQKELVNESGK*
Ga0068473_11865166	F007608	AGGAG	MSQENKYEKLPNSMYPKVRQQVVDRIATFEKVIEEHATAQREALKMVYEQLEEAKNDLKYLDEVN*
Ga0068473_11865168	F017906	AGCAG	LSAHINSNVMDTCEIEGGEKGQFDIFRNGELFLSKEDMGRFPTKEDVDDMIEELEPFSE*