Scaffold Ga0068473_1173290

Overview

Basic Information

• Taxon OID: 3300006316
• Scaffold ID: Ga0068473_1173290
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_1000m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5021
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001334	Metagenome / Metatranscriptome	720	Y
F003285	Metagenome / Metatranscriptome	496	Y
F006198	Metagenome / Metatranscriptome	379	Y
F011620	Metagenome / Metatranscriptome	289	Y
F072734	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068473_11732901	F001334	N/A	VCYEQEYLQINADDSIEQKLSGEWINKSRSTWKATDDEDNTIEIHNDGHDPELNGESWAVHTNTFAPKAFAFFCKQFIKEVKPSEVTHARTRIYPSTSN*
Ga0068473_11732902	F003285	GAGG	MPEQESIHQLQTEIQTLKIKDEFRTKELDALMNKLSDTSSKLNALSENIGRLLAGQELHKTSDNEVRDELKILHTRIGDLHDKCTEMIDKTETRVSSDISLLYKKVDSLEKWRWITIGIATAIAWLLTNIIPKFISN*
Ga0068473_11732905	F006198	GGA	MEVELDVECNNCNVKYTMIYDSDDIQSRQEEHAFHCAFCGILMAPYYDEFFEED*
Ga0068473_11732908	F011620	GGA	MIDKIIQVVLKFFGKEKLEPPTEENNESLEALERVEALDKIGEPS*
Ga0068473_11732909	F072734	GGAG	MSMMKFDDSKIKKIRKRKEQGLPPPPTDGDVVEQSKNAKGGSELIYQRVKERVPDDLWNYFQ