Scaffold Ga0068487_1156441

Overview

Basic Information

• Taxon OID: 3300006315
• Scaffold ID: Ga0068487_1156441
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT233_1_0770m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1197
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 770

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023368	Metagenome / Metatranscriptome	210	Y
F026709	Metagenome	197	N
F058216	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068487_11564411	F058216	GGAG	MNKPIGQLIKENHWSTRRLAVAMNITKEDIRKWEKSNKPY
Ga0068487_11564413	F023368	AGGAGG	MHKYDRDTTKYKDVPNAEKFMVALDKLETNEADSLGMLLSNLSMPQMCMSWVSEDDFNNLLEKYKIDLTPYVKDDTRITNSIKSEISDELFNLIDSGKYKKRNLIKALRLKFPDVNSGVICRLIKKYLSLRILEIDRTYKTKPFVIKGKYYVGGQ*
Ga0068487_11564415	F026709	AGGA	MYCILIKDNHRYRIYTNEIFNLLEEAIDYAKRCKIKVKWKVVEFDYKYFKS*