Scaffold Ga0068487_1036612

Overview

Basic Information

• Taxon OID: 3300006315
• Scaffold ID: Ga0068487_1036612
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT233_1_0770m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4088
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 770

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041247	Metagenome / Metatranscriptome	160	N
F061913	Metagenome / Metatranscriptome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068487_10366121	F061913	N/A	LEQGNFYVKCHNIFYNQQWLIDVLDSLKPSDWVDGTSKTGVSWTVNECRNIPYENMWKDIVENIDLDLIGSSERDKEQKKPWCFFSKLPPGGINLHYDHRRWGAILFPVRGKFHLTPQIFATENYTEIERFNFEKSKIHNNGTPVFFDSRVLHAVPTPIDDKEERVVFSVNIHTHPTEMYRKALDGSWLKKNTMNIGVSND*
Ga0068487_10366122	F041247	AGGAG	MTNFYSLRLDKLKFDREMLVDFYLTIDPTKWIHRQDKLPQYWPIDENNSFDRNHEFYKMLIEKINVSVDEKRIYFSRVHPGGIPNHWDFENFTKLQFPVVNDNFGNDWSETPVIFIDQFDQIVEKVDHTNNTPIMYSANYMHGTIKSLKNKYERITLVVDLNHWFERAKVKYNEGTLFTDNKAFWYEKLG*