Scaffold Ga0068487_1022139

Overview

Basic Information

• Taxon OID: 3300006315
• Scaffold ID: Ga0068487_1022139
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT233_1_0770m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10333
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (65.52%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 770

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006718	Metagenome	366	Y
F027867	Metagenome	193	N
F071629	Metagenome	122	N
F095610	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068487_102213910	F071629	GAGG	MKKKDKVQEAINKYGLKFHAFMLDLDHQIKKDKAFKNVKGNMFAGICMAMRRDITSFLRFARKQ*
Ga0068487_102213915	F006718	GAGG	MKIITLSIIICSALYGECKQPYTKNIEFKTWAECMYAGTNDTLTLYNVMGEEYINTNRIYVKFMCAEVEKKEEKQT*
Ga0068487_10221394	F095610	N/A	MFAATSAEAKNEYLGQNWRDCYAGDITPYVEYRQGGMEYIDRGSSSHEDHEYRVGVNFRFKFGNTCDKKFRKAQEDRYELRQQIELLKICRKYRNIEMGPELELVAKKCRDMKFLKKEEKRQRTNDNLFDAIMEQEHKKQMEIKQNGSE*
Ga0068487_10221395	F027867	GGAG	MDLSKSKLVVIVPIVVSILAATFGSVKYIINLTETIEENKQQVALLNKDIQILFDKYAQDKEEFTREMFNVNARVTEVNAYFRALEEILRKTTDAVRDQEWNIKDLQREVLGD*