Scaffold Ga0068487

Basic Information
Taxon OID	3300006315 Open in IMG/M
Scaffold ID	Ga0068487_1020884 Open in IMG/M
Source Dataset Name	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT233_1_0770m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Hawaii
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006315 Open in IMG/M

Scaffold ID

Ga0068487_1020884 Open in IMG/M

Source Dataset Name

Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT233_1_0770m

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Hawaii

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	24492
Total Scaffold Genes	52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	45 (86.54%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

24492

Total Scaffold Genes

52 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

45 (86.54%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	22.75	Long. (^o)	-158.0	Alt. (m)	Depth (m)	770
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

22.75

Long. (^o)

-158.0

Alt. (m)

Depth (m)

770

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022078	Metagenome / Metatranscriptome	216	Y
F023368	Metagenome / Metatranscriptome	210	Y
F026709	Metagenome	197	N
F056050	Metagenome	138	Y
F058216	Metagenome	135	Y
F096041	Metagenome	105	Y
F105364	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068487_102088411	F096041	AGGAGG	MNKNKEYIYITRTMKINVPALLCQDAIDKIQSMKKQNLIPKEKGFLYTRCRVRDSGRDKYGL*
Ga0068487_102088414	F058216	GGAG	MNKPIGQLIKENHWSTRRLAVAMNITKEDIRKWEKSNKPYKKLKKKSYLW*
Ga0068487_102088415	F056050	GGAG	MKKKKELTIEDFYNWLSECPVPYEQTCNGLNTTEYYSFNLIDCKIGEDV*
Ga0068487_102088417	F023368	AGGAG	MHRYNRATTKYKDVPNEEKFLIALDKIDTYEAEVLGMQLAHLSMPQMCASWVSEEHFNNLLEKYKIDLTPYVKDDTRITTSIKSEIASELFRLIDSDKYKKRNLIKALRLKFPDVNSGVICRLIKKYLSLRILEIDRTYKTKPFVIKGKYYVGGQ*
Ga0068487_102088418	F026709	AGGA	MYCILIKDNHRYKLYTNEIFNLLNEAIDYAKRCKIKVKWKVVEFDYKYFKS*
Ga0068487_102088431	F105364	N/A	MIKNYLRSTKNLYSCFINGYQVYYSYNTAVGIRYPNNDLYVANNVWSTTTGRHLTWIDGGSKEAKEERIKYNDLLDIFKAKNINKYYN*
Ga0068487_102088439	F022078	N/A	MPIYTFRNMLTNEQYDEIMTYEELQEYIKQEHIEQVFKINLYRYSDNNGIKDQETAWMKDKTIRGNGKFEPYGKVKTSQDNKNFKRKKDKKHFSL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0068487_1020884

Overview

Ecosystem & Geography

Associated Families

Sequences