Scaffold Ga0068487_1020883

Overview

Basic Information

• Taxon OID: 3300006315
• Scaffold ID: Ga0068487_1020883
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT233_1_0770m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36101
• Total Scaffold Genes: 75
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 53 (70.67%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 770

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000615	Metagenome / Metatranscriptome	984	Y
F010943	Metagenome	297	Y
F016675	Metagenome / Metatranscriptome	245	Y
F019227	Metagenome	231	Y
F021858	Metagenome / Metatranscriptome	217	Y
F022974	Metagenome / Metatranscriptome	212	Y
F039176	Metagenome	164	Y
F062153	Metagenome	131	N
F083235	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068487_102088311	F019227	AGCAG	MICSYCYKTQIAVKHDVGHWWNNPEDSVYVCSDDCYTKLEKLVKDGTWMDHKPEAIFGKKKHKSPSFDKPSPRDKGPKSVTDKQFSADLGKFMT*
Ga0068487_102088316	F062153	GGGGG	MRIILNGKVAKNVTVTKHEGKYIGYSLRNNSGKKWSLVRNRKDDRYLGVVNHGSMYNHKFRGYEWLSDETGDLVGVC*
Ga0068487_102088317	F039176	GAG	MIVDRESEFGGIDLSLNRSLEELISSYFEAHGAGIELDEDTRPEELDAYYALENYLADMGAI*
Ga0068487_102088318	F022974	AGG	MENNETYYIAKLSKKGEHLSSEIHKTLEAARLWAMKETKLLVSDTFLRKCKADDVVVEIDEHFFGYEISAEELIKNSKKVLINT*
Ga0068487_102088319	F000615	GGAG	MCRIRCFYEGFEEGTYGWAEMIMSYDDDIAGFIKHWSCGGKRMVITEHIEIG*
Ga0068487_102088325	F016675	N/A	MRQFEVDYETTLPPWHTGHEKVEAEDLNSVKEKFDRKHEAARIYKITEVLYDQRLVAS*
Ga0068487_102088332	F010943	N/A	MTSEELHTYLMELKNKNVQSPDIVTYKETIREALDQYRTTIPRTNLMLNEQGGVNKNVVFYSFMEAPNKPAIGDHELKRMRISWRSLRKFNKDIEVRFCYDGDDVRWTELCDEFDIKMFGFSDTFKGTEPNAWCIHRWYNMSQWADEDLNLLYMDADTYCHGDIGLLFDIYKRDPVYGREELGFRHDPNLGCAGEDPRFYLDLLDAAIMSQGGKTEVQKYCLGVILLNQSVHKLFTPEVMEYYTDLLERIRTFKVFYSIPNYRIMDEFAFWILMSRWSIRTSLFGDQDVSQTFLEKKHENHFNPIVLHYTTYAEEKFADWAPEFYCLSRSLEEREFADVAAGGIYNVTPLMREELAMSMW
Ga0068487_102088354	F083235	N/A	MIEAIVWFLPWLTEAWLWENSVKIAIVGTLIFQKPRNWCVDYDSQGYDTLFYCL*
Ga0068487_10208836	F021858	N/A	MIDVNKFENRIVKFKRISEGVEKVSHAEIRRIDYDTSSAMPRSVTARFVGPPLNAIMTLNYDEERKTFRGGLGPDIIESDFNIEEYIKDSQLGSGNETVVRSRRRGRAKF*