Scaffold Ga0068478_1288526

Overview

Basic Information

• Taxon OID: 3300006311
• Scaffold ID: Ga0068478_1288526
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_1_1000m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2105
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015350	Metagenome	255	Y
F062843	Metagenome	130	Y
F099450	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068478_12885262	F062843	AGGAG	MNIWIEYWEKSKEPSKNTHAQIREQARWVPPDPKTVRKRFCQSREDAVMYARSMEEQGYHAIIKQDNGGY*
Ga0068478_12885265	F015350	AGG	MKIYKWLIIIVVAILVGWQYDAALQKNLHEVEIRIKKFESVDLFNILEQISLAHIESVESVDILNKKQIEVQALEKEIKEKFVIQERELRAQVKTIETKLQKLRSELYDGLTKIERNVSTIDSVVDEKFKTLWMMINNK*
Ga0068478_12885266	F099450	N/A	EETTTTTSSTETIWAAIVLTWNPVVRTIDKEFSTEVACWNYYENGVGESKFGTQHLDHQGNPPTKDFHFGKMDHREYPIRTYRGINDEQGQVWLTCDIKGRYEDL*