Scaffold Ga0068478_1255331

Overview

Basic Information

• Taxon OID: 3300006311
• Scaffold ID: Ga0068478_1255331
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_1_1000m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1639
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000161	Metagenome / Metatranscriptome	1845	Y
F017656	Metagenome	239	Y
F041822	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068478_12553311	F000161	AGG	MKKFTIEVSHASGPQLSTIALDLKIMSNGWAKHGPRILINGQKLQAPSLRIEGSRKQQATSRKRQATSQS*
Ga0068478_12553314	F017656	N/A	MNYFIHDERDLSRAYVKSCKKFLKEISLKLQASSASKQTQLKGKIKT*
Ga0068478_12553318	F041822	N/A	MSIEDEDLPVKVCIEDTKLQLKKISLNNTGYGGWDQGEIRLIGKPDDWKSKKEKEWDKQ*