Scaffold Ga0068478_1206821

Overview

Basic Information

• Taxon OID: 3300006311
• Scaffold ID: Ga0068478_1206821
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_1_1000m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2291
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003635	Metagenome / Metatranscriptome	476	Y
F017046	Metagenome / Metatranscriptome	243	Y
F033078	Metagenome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068478_12068211	F033078	AGG	MKHRTLKALPEYLQPKILSAVAFINSVSPNIEKAAERINTLSKHLSDREMTYVM
Ga0068478_12068212	F003635	GAGG	MNEKNTDQLLKLIDDLITVVKKNVDNINELAKEIAELKAKK*
Ga0068478_12068215	F017046	AGGA	MNKLKEIIKEGWDVFPPWLMALNIFAIAIGLAVILFV*