Scaffold Ga0068478_1192452

Overview

Basic Information

• Taxon OID: 3300006311
• Scaffold ID: Ga0068478_1192452
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_1_1000m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 816
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023875	Metagenome	208	N
F048555	Metagenome	148	N
F049935	Metagenome / Metatranscriptome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068478_11924521	F049935	N/A	MKTDIDFEFWDAQIKHFIGIIKNESASKKNKKVAKTHLIEIQSRLKRDVRDLNKHIKELEAQL*
Ga0068478_11924522	F048555	N/A	MKSVTITIGDYDLEVIEQIFEKESKFSPNDPRDELMIEVMRQVKDNPKVDLGADEAADYKKAESRFSSCWGEDGKPLVKRETA*
Ga0068478_11924523	F023875	N/A	LCLYGITYTHSLFWVIMLFLSLIQFFAYANGMRVQIERRFLKDYNAAVKKSLEEQQQKEYNQIRNN*