Scaffold Ga0068471_1604940

Overview

Basic Information

• Taxon OID: 3300006310
• Scaffold ID: Ga0068471_1604940
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3141
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013700	Metagenome	269	Y
F055789	Metagenome	138	N
F096041	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068471_160494010	F013700	GAG	MDFKNLAYPFEDVGDAPFNVVRILNECYNDYSNGNLGDGERMADGGMVRQEFLRRIAQIGYDELKFQDIADTIENDVDENNAHLYSKYYEPSETNEEDE*
Ga0068471_160494011	F096041	AGGAGG	MNKNKEYIYITRTMKINIPAIYCNDAIDKIELMKKQDLIPKELGFLYTRCRVRDRGRDKYGL*
Ga0068471_16049402	F055789	N/A	MSDPYLEKIAQEKHLHECEKEIAEAKKEIFTLKQEIIHLKAEVKYERELRIHGADYHKPKDYHSRLRLMIEIVKKDTKLTDIHDIVDEAQRRLVRE*