Scaffold Ga0068471_1585032

Overview

Basic Information

• Taxon OID: 3300006310
• Scaffold ID: Ga0068471_1585032
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1655
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005400	Metagenome / Metatranscriptome	402	Y
F008155	Metagenome / Metatranscriptome	338	Y
F015350	Metagenome	255	Y
F018198	Metagenome	236	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068471_15850322	F005400	GGAGG	MKCTDAHPNSPQLGKNYKGFKDLTHTNMCYRCDYCDQPYQNIYWLQQIAIEYFICDRCQKYYKLTTKDMLELQYVQNRQEWKDADCWPGNGFFPYPIGFDT*
Ga0068471_15850323	F008155	AGAAG	MTPHDKHQRLAALVYDIGLKKRIEDRVEAKYSKRVEYLVNANNELMYELEQRELELVTVESELVTVEKECYGRGV*
Ga0068471_15850324	F018198	GAG	MNKATIRVYIDGKEMLYSHQNIVGAINAFLPYLTNDDLDELMLRFHTLKDHRRQKEFLALLESREKAIQKNRHDTP*
Ga0068471_15850326	F015350	N/A	MKIYKWLIILVLAILILMGWQYDAFQKNFHEIESRIKKFESVDLFNHIESVSQQLRLSVDILNEKQMEVQALEKEIKEKFTIQDNQIITQIKTIETKLQKLRSEVNDALTKIERNVSTIDSVVDEKFKTLWMMINNK*