Scaffold Ga0068471_1580492

Overview

Basic Information

• Taxon OID: 3300006310
• Scaffold ID: Ga0068471_1580492
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 945
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005400	Metagenome / Metatranscriptome	402	Y
F005464	Metagenome / Metatranscriptome	400	Y
F008155	Metagenome / Metatranscriptome	338	Y
F013899	Metagenome / Metatranscriptome	267	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068471_15804921	F005400	GGA	MTTKRKWKCTDAHPNSPPLGKNFRGFKDLTHTNMCYRCDYCDQGYQNIYWLQQIAIEYFICDNCQKYYRLTAKDMVELQYVQNRQEWRDAD
Ga0068471_15804922	F008155	AGG	MKEHSHLATLVYIRALREQIEKEAKSRYLKRIDYLVGANNELMNRLEECEKECYGRGV*
Ga0068471_15804923	F013899	N/A	LSASINSLFPDTCAIEEGETGQFELFQSGKSFMKAGHGKFFDLEDVKKKLMESGQDLFTNR*
Ga0068471_15804924	F005464	N/A	MNIKDKDTTLKLAGWALSLLCMVIGSYFLWPHIHVALLGIAFFYLGIRIFNFSTFEEYKKDRVKLLLKLSKW*