Scaffold Ga0068471_1579903

Overview

Basic Information

• Taxon OID: 3300006310
• Scaffold ID: Ga0068471_1579903
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2156
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008625	Metagenome / Metatranscriptome	330	Y
F013899	Metagenome / Metatranscriptome	267	Y
F032036	Metagenome / Metatranscriptome	181	N
F062843	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068471_15799035	F008625	N/A	VVEIAGNRLVWRHIQKENQRMILDPLGYDPIKDIDEINSRNRRKTDDPYIRATIENADHKRWKNNLAERR*
Ga0068471_15799036	F032036	GGAG	MKWIILVYLTIAAGTTEGDIRYTRLEHPTKDFQECIDIEQQINDIIHRGRESETKYVRFLYWEYKNMLHEIKAECVYADSPVPNPKWFSEKQK*
Ga0068471_15799037	F013899	N/A	LSASINSLFPDTCAIEEGEKGQFELFQSGKSFMSAGHGKFFDLEDVKKKLSESGQDLFTNR*
Ga0068471_15799038	F062843	AGGAGG	MNIWIEYWKKSSEPSKNTHAQIREQDRWVPPDPKMVNKRFCQSREDAVIYARSMEERGYHAIIKQDNGGY*