Scaffold Ga0068471_1524777

Overview

Basic Information

• Taxon OID: 3300006310
• Scaffold ID: Ga0068471_1524777
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1707
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025590	Metagenome / Metatranscriptome	201	N
F037940	Metagenome	167	Y
F101328	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068471_15247771	F037940	GGAGG	MKTLVIILLGVKLNYVSFPMKFENCLDSFMFTVERMATYHEWTNKEQYQGYYTKSGRLVIGHYCK*
Ga0068471_15247773	F101328	AGGA	MYIEEYEIVSLGTKYTGKHGNTEKKNQVLTRLQSEDGITLKELSNLIESFDDSIHRHEGKNCKIKVEFKDTQ*
Ga0068471_15247776	F025590	N/A	MLISMLVNPIMAGILPELANECEAKRDRLMKDIQNVDRSSVIPDHYDKAKSLLKLVDEAKNEHDRASFLRRMITTEEQFSVDMNK*