Scaffold Ga0068471_1505318

Overview

Basic Information

• Taxon OID: 3300006310
• Scaffold ID: Ga0068471_1505318
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2598
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000615	Metagenome / Metatranscriptome	984	Y
F025857	Metagenome / Metatranscriptome	200	Y
F038414	Metagenome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068471_15053181	F038414	AGAAG	MTREEQRDNTINEFYKKRTSPKTLQIQASKTVRSNAEWLHISTSQEDGEGQGTYDVGRRVMKRERLADKKLRAKQAKVA*
Ga0068471_15053182	F025857	N/A	MTLHRIAPGCTFESEDDVVMNPVIGRKKSVAVKSPKPYYRTSELDNIPDNFVERMKKFKRVEVRKEEREVITPDGFAVSIAYNKSGYQLIPKEDL*
Ga0068471_15053186	F000615	N/A	VSGSERPVNIMCRIRLFYECSDGSMGFAEHVMRYEDDIVGFIKHWKTGGRMVITEHIDLV