NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068471_1504265

Scaffold Ga0068471_1504265


Overview

Basic Information
Taxon OID3300006310 Open in IMG/M
Scaffold IDGa0068471_1504265 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1718
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001930Metagenome615Y
F005516Metagenome398Y
F077768Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0068471_15042651F005516AGGAMKTFKGYLTEFAIQSTSDYVFMAATNSSDLMIPISGPMFKRIWPNTIRATVFHATDPDHLAGLKKLQGKKKSISAFFSMMANQMEGGIATDGGVVIEMEADILVSAKDDIMSAVDKTGRRWVEMSWFENAQSWGNPAGFDKVERGLNTL
Ga0068471_15042652F001930N/AMKSFKTYLKEDAPAWQSSTSQKIFDFGQISYMQIPLTSSTMEWIFQVQIPRATVFHVTNGIGLEKLKRLQNKKKSISAFFNMDASTMESGIQGGGGLVVELDANIIMSGKGDLMSMPDKTGRRWVELYNIDPKENMHVELEKMLIDLAIKHDPKNKEYLKTVPEIGIGVWYKLQTDFKDDGKKISLIIADYIDGVNAILKKHKKDIQGRIHGYYVRRGTIAVKHPSGRMVGGDSEIKEWNVYDEQVVDKIKIIKVHTFNTKTRETDWIAKSVIPRLGKIPHTHWVGGATELSTYVSQVAEAEVRSIGRSKR*
Ga0068471_15042653F077768N/AIGRSTGGKTKSLIIKDYLDGMEKIMKKHSKSLRSVLTDYTKKRTLEPDPDSGDKAMWDELVVNNFKIQKIHVGPEFSPDFDGDDDIDGFPFELYDDTGDMVDYINRTVQKIKL*

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