Scaffold Ga0068471_1504265

Overview

Basic Information

• Taxon OID: 3300006310
• Scaffold ID: Ga0068471_1504265
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1718
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001930	Metagenome	615	Y
F005516	Metagenome	398	Y
F077768	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068471_15042651	F005516	AGGA	MKTFKGYLTEFAIQSTSDYVFMAATNSSDLMIPISGPMFKRIWPNTIRATVFHATDPDHLAGLKKLQGKKKSISAFFSMMANQMEGGIATDGGVVIEMEADILVSAKDDIMSAVDKTGRRWVEMSWFENAQSWGNPAGFDKVERGLNTL
Ga0068471_15042652	F001930	N/A	MKSFKTYLKEDAPAWQSSTSQKIFDFGQISYMQIPLTSSTMEWIFQVQIPRATVFHVTNGIGLEKLKRLQNKKKSISAFFNMDASTMESGIQGGGGLVVELDANIIMSGKGDLMSMPDKTGRRWVELYNIDPKENMHVELEKMLIDLAIKHDPKNKEYLKTVPEIGIGVWYKLQTDFKDDGKKISLIIADYIDGVNAILKKHKKDIQGRIHGYYVRRGTIAVKHPSGRMVGGDSEIKEWNVYDEQVVDKIKIIKVHTFNTKTRETDWIAKSVIPRLGKIPHTHWVGGATELSTYVSQVAEAEVRSIGRSKR*
Ga0068471_15042653	F077768	N/A	IGRSTGGKTKSLIIKDYLDGMEKIMKKHSKSLRSVLTDYTKKRTLEPDPDSGDKAMWDELVVNNFKIQKIHVGPEFSPDFDGDDDIDGFPFELYDDTGDMVDYINRTVQKIKL*