Scaffold Ga0068471_1493605

Overview

Basic Information

• Taxon OID: 3300006310
• Scaffold ID: Ga0068471_1493605
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2050
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006364	Metagenome / Metatranscriptome	375	Y
F007608	Metagenome / Metatranscriptome	348	Y
F012070	Metagenome	284	Y
F017906	Metagenome	238	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068471_14936051	F012070	AGG	MPIDVKINEDDYILYEILCDYCDEEYVIKYKMNDKSPKQAIECCPFCSNLIEEPAESIIHDEETGWD*
Ga0068471_14936054	F006364	AGGAG	MELEVDNDTKKMRILNYLDYMDDNSLKEISVALYNLSIRRREISNKKQRELVNESGK*
Ga0068471_14936055	F007608	GGAG	MSQENKYSKLPSSMYPKVRQQVVDRITTFEKVIEDHTAAQKEALKLVYEQLEEAKSDLKYLNEVN*
Ga0068471_14936057	F017906	AGCAG	LSAHINSNIMDTCGIEGGERGQFDIFRNGELFLSKEDMGRFPTKEDVDAMIKELEPFSE*