Scaffold Ga0068471_1434315

Overview

Basic Information

• Taxon OID: 3300006310
• Scaffold ID: Ga0068471_1434315
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2250
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002078	Metagenome / Metatranscriptome	596	Y
F013820	Metagenome / Metatranscriptome	268	Y
F015741	Metagenome / Metatranscriptome	252	Y
F022754	Metagenome / Metatranscriptome	213	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068471_14343153	F015741	GGAG	MKLKQRFGIGLVCLMFSTGCSFPIVELIPPVFNFALGFYDHNDYYSKECLWYDEIKLNDDTKKWLLESNPPEIVSEDLSKVSRNNDIYKEVCEEHKSMADKMKAKATRVIDKTLMATEE*
Ga0068471_14343154	F002078	AGGAG	MDIATMFEGQGWFAIAGQIVLIFTAVTGALPDRFVQKIPVLGTVWPIFNWLAGNVFNNINHPKGMAAQNDVEKEIDEAKAKVRDRSGMPDVLDGM*
Ga0068471_14343155	F022754	AGTAG	MNELIVAIMLVIPSPYKMVDWTVNEVPTQIQVIHKSGLEVSYTATPVSCNFKPRHKREMIFRSPQDRCYSVFDLSSPRFVRHPDYWYKIELPKPPLVNSGE*
Ga0068471_14343156	F013820	GGAG	MVPTIVGLIDKFIPGGKTYALMGLGVLMTICQMGGWHTFSPEAWGLLGIGGAATWKMGADRK*