Scaffold Ga0068471_1434199

Overview

Basic Information

• Taxon OID: 3300006310
• Scaffold ID: Ga0068471_1434199
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2014
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036930	Metagenome	169	Y
F046014	Metagenome	152	N
F070566	Metagenome / Metatranscriptome	123	N
F086173	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068471_14341993	F036930	AGGAG	MTEYTHLVEETRRQEAFREWKNKASYIHVNNGKIETKYQDGRTEIEDTSTGKKTYDFPEGYEGEAYRESLFNKFLRVFTA*
Ga0068471_14341995	F046014	GAGG	MIRKRVYLNKPQAEGLIQIFKRNQLLDLLVYVAIYTKNKSPHYKLCIDCPIDTHPRLSNKLQDVLHTLVDRHSKALKQLDWEEYDDAETPIEQVGLTPDFKEYVEDKEKEE*
Ga0068471_14341996	F086173	N/A	MLYKDKLPCEPLLHFDSKDAGTIKWTWRTKPAEAIYWKTYKPKKRDIKILSRVTPEQRQKVTTELLRSIIQTEHPPKTKQPKVRTL*
Ga0068471_14341998	F070566	N/A	RKMPKLEFTEAYWDQITSIFEGIQVIESKKAGRPIKYYVFPSKEGVPIITLHDDEEEILKNRKLHKRVIGEIINKITEEL*