Scaffold Ga0068471_1403164

Overview

Basic Information

• Taxon OID: 3300006310
• Scaffold ID: Ga0068471_1403164
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2978
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002348	Metagenome / Metatranscriptome	568	Y
F014792	Metagenome	260	Y
F090512	Metagenome	108	N
F092216	Metagenome	107	Y
F101872	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068471_14031641	F092216	GGA	MYDRFDLEEEIMNVWQTEDDLDAITHRIMEDPDPIPNKEIANLIISVSKIHDLRCQKLFDIFEKMVHDNCFISKGTSLDYRGVPLDDDEKYDYPKSEDEDAMQGNFWPSLDNGQIH*
Ga0068471_140316412	F014792	N/A	NERENYSWGIIQDMIEREINSAFKLREPIKMPSKKEIKQIIKSTVHKERK*
Ga0068471_14031642	F002348	GGAGG	MIDYSMKSKDKLMKIGGWILSFLTIAAGASFLWPHFHVALLGFVLIYIGIRIFNFSTFEEYKEKRVKLLLKLWN*
Ga0068471_14031644	F090512	N/A	MKIRYIIGIAYLSYIGMMGGSVIVEAIIIGLVLGMYDILFNNGVV*
Ga0068471_14031649	F101872	AGGA	MDTLKQIIQDIKVSNSLQGQANIGSRCNNFGLSEEDIRILMFASKPIKEPCDCHDELRFDQNVFKKPSIHETLG*